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Can one run a surface scan from a partition of the same physical drive?

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Small backstory: I'm defragmenting a Mountain Lion partition of around 400 GB from a Yosemite partition of around 100GB - both partitions are on the same drive, but the ML one has been running slowly and the ridiculous level of volume fragmentation has finally explained why (get this - 92 GB free space, largest contiguous block is 325MB... Thanks a lot, Apple "macs don't need to be defragmented" tech support :D :D :D

Anyway I'd like to surface scan this drive, because I began volume optimization more than 36 hours ago and it's only about 43% complete. Now before anyone says anything, I'm NOT going to abort this job because I can see that it is actually progressing, I'm very confident in TTP's abilities from past experience, and I'm a stubborn fecker who won't surrender to my robot overlord just yet ;) But the slow speed of this does make me wonder if there are dodgy blocks making the issue worse. Now I should point out that I *think* the issue here is the ratio of fragmented files to free space - 92GB free but also apparently 90GB worth of fragmentation in just 88 files (I'm guessing standard definition DVD rips, usually 4GB each, are the culprits here) - so maybe it's no surprise that it's going to take a few days to complete this job. But it has spooked me a little so I'd like to be absolutely sure there aren't any dangerous drive problems going on as well.

I don't currently have an external drive big enough to create an edrive from this mac (I have 8 GB memory, so the resulting eDrive would have to be at least 12GB and I think even more than this if I remember correctly) - is it possible to run a surface scan of this drive from a partition on the drive, or at least to just scan the partition I'm not currently booted from? I'm aware that a surface scan ignores partitions so really this comes down to whether a drive needs to be entirely unmounted in order to be scanned - anyone know if this can be done?

I'll get myself a new external HD in a week or so if I must, but I'm a little impatient so if I can run the surface scan as-is once this volume optimise is finished, I'd like to know. Cheers!

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